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2012-06-10	Heng Li	added another radix_sort from gorset/radix	commit \| commitdiff \| tree \| snapshot
2012-06-08	Heng Li	hopefully the final version	commit \| commitdiff \| tree \| snapshot
2012-06-08	Heng Li	improved my implementation of radix sort	commit \| commitdiff \| tree \| snapshot
2012-06-08	Heng Li	a new radix sort implementation	commit \| commitdiff \| tree \| snapshot
2012-06-08	Heng Li	ditching combsort in radix sort	commit \| commitdiff \| tree \| snapshot
2012-06-07	Heng Li	fixed compiling errors	commit \| commitdiff \| tree \| snapshot
2012-06-07	Heng Li	added radix sort	commit \| commitdiff \| tree \| snapshot
2012-06-07	Heng Li	for g++ compatibility	commit \| commitdiff \| tree \| snapshot
2012-04-15	Heng Li	bugfix: empty fasta/q lines cause troubles	commit \| commitdiff \| tree \| snapshot
2012-04-09	Heng Li	minor changes	commit \| commitdiff \| tree \| snapshot
2012-04-08	Heng Li	changed the order	commit \| commitdiff \| tree \| snapshot
2012-04-08	Heng Li	some basic bit operations	commit \| commitdiff \| tree \| snapshot
2012-04-05	Heng Li	bugfix: segfault in ksw	commit \| commitdiff \| tree \| snapshot
2012-03-20	Heng Li	bug in the latest keq.h	commit \| commitdiff \| tree \| snapshot
2012-03-06	Heng Li	compatibility with the Windows line separator	commit \| commitdiff \| tree \| snapshot
2012-03-03	Heng Li	kill errors and warnings by g++ -Wall	commit \| commitdiff \| tree \| snapshot
2012-03-03	Heng Li	bug in some cases	commit \| commitdiff \| tree \| snapshot
2012-03-02	Heng Li	another bug in u8; allow **qry set to NULL	commit \| commitdiff \| tree \| snapshot
2012-03-02	Heng Li	bugfix: wrong score for KSW_XBYTE	commit \| commitdiff \| tree \| snapshot
2012-03-02	Heng Li	bug caused by the last minute change	commit \| commitdiff \| tree \| snapshot
2012-03-02	Heng Li	stop if >= not ==	commit \| commitdiff \| tree \| snapshot
2012-03-02	Heng Li	Merge branch 'master' of github.com:attractivechaos...	commit \| commitdiff \| tree \| snapshot
2012-03-02	Heng Li	refine the ksw APIs	commit \| commitdiff \| tree \| snapshot
2012-03-02	Heng Li	find the start positions; fixed a bug in example	commit \| commitdiff \| tree \| snapshot
2012-02-12	Attractive...	Merge pull request #3 from droe/master	commit \| commitdiff \| tree \| snapshot
2012-02-11	Daniel Roethlisberger	Remove bogus kh_del() in example code	commit \| commitdiff \| tree \| snapshot
2012-01-16	Heng Li	updated README	commit \| commitdiff \| tree \| snapshot
2012-01-16	Heng Li	invoke a shell when necessary	commit \| commitdiff \| tree \| snapshot
2012-01-16	Heng Li	use fread() instead of fgetc() in example	commit \| commitdiff \| tree \| snapshot
2012-01-16	Heng Li	free krand_t in the example	commit \| commitdiff \| tree \| snapshot
2012-01-15	Heng Li	minor change	commit \| commitdiff \| tree \| snapshot
2012-01-15	Heng Li	Mersenne Twister pseudorandom number generator	commit \| commitdiff \| tree \| snapshot
2012-01-08	Heng Li	minor fix in the example	commit \| commitdiff \| tree \| snapshot
2012-01-08	Heng Li	smart open	commit \| commitdiff \| tree \| snapshot
2011-12-29	Heng Li	optionally declare kseq_*() as global functions	commit \| commitdiff \| tree \| snapshot
2011-12-28	Heng Li	Graph related routines. Unfinished. DON'T USE!	commit \| commitdiff \| tree \| snapshot
2011-10-28	Heng Li	improved backward compatibility	commit \| commitdiff \| tree \| snapshot
2011-10-28	Heng Li	minor changes	commit \| commitdiff \| tree \| snapshot
2011-10-28	Heng Li	fixed a bug in reading	commit \| commitdiff \| tree \| snapshot
2011-10-28	Heng Li	expose bgzf_read_block()	commit \| commitdiff \| tree \| snapshot
2011-10-28	Heng Li	added the BGZF library	commit \| commitdiff \| tree \| snapshot
2011-10-10	Heng Li	fixed a compiling error using g++ (not gcc)	commit \| commitdiff \| tree \| snapshot
2011-09-23	Heng Li	remove ksprintf_fast()	commit \| commitdiff \| tree \| snapshot
2011-09-23	Heng Li	added ks_resize()	commit \| commitdiff \| tree \| snapshot
2011-09-23	Heng Li	remove ksprintf_fast()	commit \| commitdiff \| tree \| snapshot
2011-09-23	Heng Li	remove ksprintf_fast(); it is not that fast...	commit \| commitdiff \| tree \| snapshot
2011-09-16	Heng Li	change the stepping hash function ksprintf-final	commit \| commitdiff \| tree \| snapshot
2011-09-16	Heng Li	allow to optionally use linear probing	commit \| commitdiff \| tree \| snapshot
2011-09-16	Heng Li	bugfix: resize() cannot shrink; added comments	commit \| commitdiff \| tree \| snapshot
2011-09-16	Heng Li	speed up khash; see khash.h for details	commit \| commitdiff \| tree \| snapshot
2011-09-11	Heng Li	removed an unused variable	commit \| commitdiff \| tree \| snapshot
2011-09-11	Heng Li	added brief documentation	commit \| commitdiff \| tree \| snapshot
2011-08-31	Heng Li	increase the buffer size to 16kb	commit \| commitdiff \| tree \| snapshot
2011-08-19	Heng Li	added ksa to README	commit \| commitdiff \| tree \| snapshot
2011-08-19	Heng Li	Constructing suffix array for multi-sentinel str.	commit \| commitdiff \| tree \| snapshot
2011-08-18	Heng Li	drop kseq_read_robust()	commit \| commitdiff \| tree \| snapshot
2011-08-18	Heng Li	fixed a potential memory leak	commit \| commitdiff \| tree \| snapshot
2011-08-18	Heng Li	changed last-modifed	commit \| commitdiff \| tree \| snapshot
2011-08-18	Heng Li	a faster but less robust implementation of kseq	commit \| commitdiff \| tree \| snapshot
2011-07-26	Heng Li	added kstring_sprintf.cc	commit \| commitdiff \| tree \| snapshot
2011-07-26	Heng Li	minor speed up	commit \| commitdiff \| tree \| snapshot
2011-07-26	Heng Li	minor improvement	commit \| commitdiff \| tree \| snapshot
2011-07-26	Heng Li	accelerate integer sprintf() a little bit	commit \| commitdiff \| tree \| snapshot
2011-07-25	Heng Li	killed a warning	commit \| commitdiff \| tree \| snapshot
2011-07-25	Heng Li	%g and %G should be working; more tests needed	commit \| commitdiff \| tree \| snapshot
2011-07-25	Heng Li	implemented %f/e/g in ksprintf_fast(); unfinished	commit \| commitdiff \| tree \| snapshot
2011-07-20	Heng Li	better implementation of ksprintf_fast()	commit \| commitdiff \| tree \| snapshot
2011-07-20	Heng Li	added ksprintf_fast(); improve later...	commit \| commitdiff \| tree \| snapshot
2011-07-02	Heng Li	added Makefile	commit \| commitdiff \| tree \| snapshot
2011-07-02	Heng Li	move testing program to a separate directory	commit \| commitdiff \| tree \| snapshot
2011-06-04	Heng Li	change to 0 indexed array	commit \| commitdiff \| tree \| snapshot
2011-05-18	Heng Li	remove the thresholding version	commit \| commitdiff \| tree \| snapshot
2011-05-08	Heng Li	do not use shift for the "short" version	commit \| commitdiff \| tree \| snapshot
2011-05-08	Heng Li	fixed a bug in computing qe	commit \| commitdiff \| tree \| snapshot
2011-05-08	Heng Li	added 16-bit sse2; query-end seems wrong, sometime	commit \| commitdiff \| tree \| snapshot
2011-05-08	Heng Li	find the 2nd best score; still imperfect...	commit \| commitdiff \| tree \| snapshot
2011-05-08	Heng Li	use integer gmax; code cleanup	commit \| commitdiff \| tree \| snapshot
2011-05-08	Heng Li	minor change	commit \| commitdiff \| tree \| snapshot
2011-05-08	Heng Li	prepare to keep the 2nd largest score	commit \| commitdiff \| tree \| snapshot
2011-05-07	Heng Li	keep the ending position	commit \| commitdiff \| tree \| snapshot
2011-05-06	Heng Li	update README	commit \| commitdiff \| tree \| snapshot
2011-05-06	Heng Li	a heuristic to relax the 255 max score limit	commit \| commitdiff \| tree \| snapshot
2011-05-06	Heng Li	simplify a bit	commit \| commitdiff \| tree \| snapshot
2011-05-05	Heng Li	fixed a stupid bug	commit \| commitdiff \| tree \| snapshot
2011-05-05	Heng Li	added reverse alignment	commit \| commitdiff \| tree \| snapshot
2011-05-05	Heng Li	more comments	commit \| commitdiff \| tree \| snapshot
2011-05-05	Heng Li	added license and a couple of comments	commit \| commitdiff \| tree \| snapshot
2011-05-05	Heng Li	Added a simple CLI	commit \| commitdiff \| tree \| snapshot
2011-05-05	Heng Li	added a few comments	commit \| commitdiff \| tree \| snapshot
2011-05-05	Heng Li	allocate query profile in one memory block	commit \| commitdiff \| tree \| snapshot
2011-05-05	Heng Li	incorporate ideas from swps3	commit \| commitdiff \| tree \| snapshot
2011-05-05	Heng Li	SSE2 Smith-Waterman; unfinished	commit \| commitdiff \| tree \| snapshot
2011-05-02	Heng Li	bugfix in os.getopt(): "-" not recognized	commit \| commitdiff \| tree \| snapshot
2011-05-01	Heng Li	C verions of Keith's C++ progs; see inner comments	commit \| commitdiff \| tree \| snapshot
2011-04-21	Heng Li	all minor changes	commit \| commitdiff \| tree \| snapshot
2011-04-21	Heng Li	added Spearman coefficient	commit \| commitdiff \| tree \| snapshot
2011-04-21	Heng Li	added Pearson correlation coefficient	commit \| commitdiff \| tree \| snapshot
2011-04-18	Heng Li	code cleanup in intvovlp	commit \| commitdiff \| tree \| snapshot
2011-04-18	Heng Li	added some comments	commit \| commitdiff \| tree \| snapshot
2011-04-18	Heng Li	added quick overlap testing	commit \| commitdiff \| tree \| snapshot
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C library for generic data structures and algorithms